Source: ALL
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
121 0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 0.800 1.000 2 2011 2012
dbSNP: rs7574865
rs7574865
STAT4
59 0.574 0.720 2 191099907 intron variant T/G snv 0.79 0.800 1.000 1 2011 2011
dbSNP: rs2816316
rs2816316
LOC105371664
5 0.882 0.200 1 192567683 intron variant C/A snv 0.79 0.700 1.000 1 2011 2011
dbSNP: rs951005
rs951005 		10 0.807 0.200 9 34743684 intron variant G/A snv 0.78 0.700 1.000 1 2011 2011
dbSNP: rs548234
rs548234
ATG5
11 0.763 0.360 6 106120159 intron variant C/T snv 0.76 0.700 1.000 1 2011 2011
dbSNP: rs2249937
rs2249937
LOC112267968
3 1.000 0.080 6 159094277 non coding transcript exon variant T/G snv 0.76 0.700 1.000 1 2011 2011
dbSNP: rs1953126
rs1953126
PHF19
3 1.000 0.120 9 120878222 intron variant T/C snv 0.68 0.800 1.000 1 2011 2011
dbSNP: rs653178
rs653178
ATXN2
41 0.672 0.600 12 111569952 intron variant C/T snv 0.67 0.800 1.000 1 2011 2011
dbSNP: rs636393
rs636393 		2 6 137686393 intron variant G/T snv 0.66 0.700 1.000 1 2011 2011
dbSNP: rs212402
rs212402
LOC105378083
3 1.000 0.080 6 159051263 intron variant G/A snv 0.66 0.700 1.000 1 2011 2011
dbSNP: rs4675374
rs4675374
ICOS ; LOC101927840
5 0.882 0.200 2 203937855 intron variant T/C snv 0.65 0.700 1.000 1 2011 2011
dbSNP: rs1355208
rs1355208 		2 2 30222456 intergenic variant A/G snv 0.65 0.700 1.000 1 2011 2011
dbSNP: rs231804
rs231804 		4 0.925 0.200 2 203843923 intergenic variant C/T snv 0.60 0.700 1.000 1 2011 2011
dbSNP: rs212389
rs212389
LOC105378083 ; LOC112267968
4 0.925 0.160 6 159068759 non coding transcript exon variant G/A snv 0.60 0.700 1.000 1 2011 2011
dbSNP: rs2280141
rs2280141
PLEKHA1
4 1.000 0.040 10 122433665 3 prime UTR variant T/G snv 0.56 0.700 1.000 1 2011 2011
dbSNP: rs10903122
rs10903122 		5 0.882 0.200 1 24977085 intergenic variant A/G snv 0.56 0.700 1.000 1 2011 2011
dbSNP: rs934734
rs934734
SPRED2
4 0.925 0.160 2 65368452 intron variant G/A;T snv 0.54 0.700 1.000 1 2011 2011
dbSNP: rs906868
rs906868 		4 0.925 0.120 2 30225478 intergenic variant G/T snv 0.53 0.700 1.000 1 2011 2011
dbSNP: rs296547
rs296547
MROH3P
5 0.882 0.200 1 200923009 intron variant T/C snv 0.53 0.700 1.000 1 2011 2011
dbSNP: rs3761847
rs3761847
TRAF1
8 0.827 0.200 9 120927961 intron variant G/A snv 0.52 0.700 1.000 1 2011 2011
dbSNP: rs11676922
rs11676922
AFF3
4 0.925 0.160 2 100190478 intron variant T/A snv 0.51 0.700 1.000 1 2011 2011
dbSNP: rs13003464
rs13003464
PUS10
7 0.827 0.200 2 60959694 intron variant A/G snv 0.50 0.700 1.000 1 2011 2011
dbSNP: rs1738074
rs1738074
TAGAP ; LOC105378083 ; LOC107986664
9 0.790 0.320 6 159044945 5 prime UTR variant T/C snv 0.49 0.700 1.000 1 2011 2011
dbSNP: rs1194849
rs1194849
SPRED2
2 2 65379519 intron variant T/C snv 0.49 0.700 1.000 1 2011 2011
dbSNP: rs6706689
rs6706689
PUS10
2 2 60943910 intron variant A/G snv 0.48 0.700 1.000 1 2011 2011